Re: [Freesurfer] Some questions about fsaverage

2015-01-26 Thread Douglas N Greve
You'll need to get a copy of mri_surf2surf.{linux,mac}. It was there all the time I just did not put it on the installation page. I've updated the page with this link ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.1.0/xhemi/mri_surf2surf.{linux,mac} When you re-run delete the xhemi fo

Re: [Freesurfer] Some questions about fsaverage

2015-01-23 Thread Alexandre Routier
Hello everyone, I have a new question concerning fsaverage: I would like to perform some asymmetry analyses but I noticed that the left and right hemispheres were not symmetric. I found here ( https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi ) how to register a subject to fsaverage_sym but I have

Re: [Freesurfer] Some questions about fsaverage

2014-12-05 Thread Alexandre Routier
Hello, Thanks for your answers :) mri_annotation2label enabled me to convert the ROI of Desikan Atlas as I wanted and the Brodmann were indeed in $FREESURFER_HOME/subjects/fsaverage/label . Have a nice day, Alexandre 2014-12-04 23:01 GMT+01:00 Bruce Fischl : > Hi Alexandre > > I'm not entirel

Re: [Freesurfer] Some questions about fsaverage

2014-12-04 Thread Bruce Fischl
Hi Alexandre I'm not entirely sure what you are asking, but the fsaverage Brodmann areas and parcellations should all be stored in the directory: $FREESURFER_HOME/subjects/fsaverage/label cheers Bruce On Thu, 4 Dec 2014, Alexandre Routier wrote: Hello, I am currently working with corti

Re: [Freesurfer] Some questions about fsaverage

2014-12-04 Thread Douglas N Greve
you can use mri_annotation2label to convert each annotation into a label. The label is a text file with a list of indices. doug On 12/04/2014 02:25 PM, Alexandre Routier wrote: > Hello, > > I am currently working with cortical thickness and more particularly > with the fsaverage. Since the thick