Hi Tamir
I guess a quick and dirty way to do it would be to use mris_expand to create a
surface 1mm out from the white, then fill that with mris_ribbon (or maybe
mris_fill?). That would probably leave small holes. An alternative would be to
use some kind of non-maximum suppression, but I'm not
You can use mri_surf2vol with the --mkmask option (method 2; see
mri_surf2vol --help), eg,
cd subject/surf
mri_surf2vol --mkmask --hemi lh --o mask.lh.mgz --identity subject
--template ../mri/nu.mgz
If you want to go to another volume, supply the registration to that
volume with --reg instead o
