External Email - Use Caution
As Yujing said, the 5.1.0 release is quite old (dating back to CentOS4) and
binary backwards compatibility cannot be expected to work indefinitely going
forwards to newer versions of the OS. I ran a simple mri_surf2surf
command from 5.1.0 on CentOS7
Hi Tracy,
I’m wondering if you have any success with other subjects. Can you attach the
failed recon-all.log?
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
On Behalf Of Tracy Riggins
Sent: Sunday, March 5, 2023 1:22 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Segm
External Email - Use Caution
Hello Yuhui,
Did you try something like the following (from
https://secure-web.cisco.com/1hub7Psr57JCR6YgoGWEJLmEuz6voF9O_4wwW1Ngq-Krek8hQagKNFY9pH9jg_UzrEMFBjBl1Lo36JvBnp02E7HopuMgcNTaG0pTRx-2PR61unk8dCsv-4Gp50vSlBbeEJzjsRZGWS1jqAp0pVmSzDy9Ob23Rg1PB3s
N Greve
>
> *Sent:* Monday, December 18, 2017 5:09:25 PM
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] Segmentation fault (core dumped)
>
> We need more details. Try looking at this web site
>
>
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>
>
We need more details. Try looking at this web site
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
On 12/18/2017 04:08 PM, Uquillas, Federico D'Oleire wrote:
>
> Dear FreeSurfer experts,
>
>
> I am unable to run the qcache procedure and was wondering if anybody
> could help me find what is goi
Dear FreeSurfer experts,
I am unable to run the qcache procedure and was wondering if anybody could help
me find what is going on.
I've tried running qcache with several versions of the fsaverage (e.g.,
fsaverage5, fsaverage6, fsaverage), and have also tried running it in a variety
of subjec
x range to be [126, 130] in xformed coordinates
> best xformed slice 128
> cc center is found at 128 117 99
> eigenvectors:
> 0.00099 0.00201 1.0;
> -0.30008 -0.95391 0.00221;
> 0.95391 -0.30008 -0.00034;
> Segmentation fault (core dumped)
> Linux neuroimaging01 4.8.0-52-g
matic section. I will report,
if the issue appears there, too.
Regards,
Jens
Gesendet: Montag, 29. Mai 2017 um 07:41 Uhr
Von: "Jens Offenbach"
An: freesurfer@nmr.mgh.harvard.edu
Cc: "Freesurfer support list"
Betreff: Re: [Freesurfer] Segmentation fault (core dumped) error
I
An: freesurfer@nmr.mgh.harvard.edu
Cc: "Freesurfer support list"
Betreff: Re: [Freesurfer] Segmentation fault (core dumped) error
I am facing a similar issue with recon-all in FreeSurfer 6.0.0. on two subjects
from OASIS-Brains.
I will retry the run.
This is the last log entry:
mri_cc -aseg
: Freitag, 26. Mai 2017 um 15:52 Uhr
Von: "Devin Sodums"
An: "Freesurfer support list"
Betreff: Re: [Freesurfer] Segmentation fault (core dumped) error
Sure thing, I’ll send it in a few.
Thanks,
Devin
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr
Sure thing, I'll send it in a few.
Thanks,
Devin
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: Friday, May 26, 2017 9:49 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Segmentation fault (core d
No idea. Can you upload the subject so I can take a closer look?
https://gate.nmr.mgh.harvard.edu/filedrop2
On 5/26/17 9:35 AM, Devin Sodums wrote:
Hello FreeSurfer developers,
I’m attempting to run recon-all on a T1 image and keep getting the
same error message:
Segmentation fault (core d
It did not find any voxels in the ROI. This can happen for several
reasons. First, check your registratoin (tkregister-sess). Second, it
can happen because the size of the ROI is too small and does not occupy
enough space in a voxel. Try changing the -fillthresh to something
smaller than the de
what server did you upload it to? What is the name of the file? Make
sure to include the entire output folder, not just the input files
On 12/21/2015 03:33 PM, Fengji Geng wrote:
> Hi Bruce,
>
> I have uploaded all the data to the server. The command that I run is
> 'recon-all -all -s $s -hippoc
Martina,
Can you send me the recon-all.log file?
Nick
On Tue, 2013-05-07 at 17:38 +0200, martina.andell...@fastwebnet.it
wrote:
> Hi Freesurfer experts,
> I've got Ubuntu version 13.04 installed on my computer, and after I saw the
> post
> : "http://www.mail-archive.com/freesurfer@nmr.mgh.harv
Renat,
You should try running the centos4 build of freesurfer on Fedora Core 3.
The wiki site incorrectly stated to use the rh9 build with fc3, but
after speaking with our sysadmin, apparently Fedora Core 3 (fc3) is
closer in likeness to Centos4, so you may want to give the centos4 build
a try.
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