Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-18 Thread Douglas Greve
yes On 3/18/14 9:14 AM, amirhossein manzouri wrote: Tanks doug, Is it ok like this: mri_glmfit-sim --glmdir qdec/Untitled --cache 1.3 neg ? Best regards, Amirhossein Manzouri On Mon, Mar 17, 2014 at 8:25 PM, Douglas N Greve mailto:gr...@nmr.mgh.harvard.edu>> wrote: you will have

Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-18 Thread amirhossein manzouri
Tanks doug, Is it ok like this: mri_glmfit-sim --glmdir qdec/Untitled --cache 1.3 neg ? Best regards, Amirhossein Manzouri On Mon, Mar 17, 2014 at 8:25 PM, Douglas N Greve wrote: > > you will have to run the correction for multiple comparisons with > mri_glmfit-sim (ie, you can't do it in q

Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-17 Thread Douglas N Greve
you will have to run the correction for multiple comparisons with mri_glmfit-sim (ie, you can't do it in qdec). doug On 03/17/2014 02:03 PM, amirhossein manzouri wrote: > Yes. Basically I want to see the effect of restricting the brain area > on the group comparison clusters from Monte Carlo S

Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-17 Thread amirhossein manzouri
Yes. Basically I want to see the effect of restricting the brain area on the group comparison clusters from Monte Carlo Simulation (threshold 1.3). As you mentioned before from mdi_glmfit I just get a masked version of whole brain analysis. How can I do the correction for multiple comparison with M

Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-17 Thread Douglas N Greve
I don't know what you mean. Can you elaborate? doug On 03/17/2014 01:19 PM, amirhossein manzouri wrote: > Can I also use mri_surfcluster as it is in qdec since I want to > compare the whole brain and masked brain results? > > Best regards, > Amirhossein Manzouri > > > > > On Fri, Mar 14, 2014 at 4

Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-17 Thread amirhossein manzouri
Can I also use mri_surfcluster as it is in qdec since I want to compare the whole brain and masked brain results? Best regards, Amirhossein Manzouri On Fri, Mar 14, 2014 at 4:49 PM, Douglas N Greve wrote: > > you are doing it the right way. There is no difference in the uncorrected > analysi

Re: [Freesurfer] Restrict QDEC analysis to a region

2014-03-14 Thread Douglas N Greve
you are doing it the right way. There is no difference in the uncorrected analysis. There will be a difference when you correct for multiple comparisons doug On 03/14/2014 11:15 AM, amirhossein manzouri wrote: > Dear Experts, > I have read the previous posts in the list regarding restricted RO