This line hidden in the output I think is the reason:
mri_make_uchar: Command not found.
That command was introduced in 5.1, and is used by the talairach stage.
As Martin suggests, a separate v5.2 install is necessary.
Nick
On Mon, 2013-01-07 at 15:40 -0500, Martin Reuter wrote:
> Hi Jonathan,
Hi Jonathan,
you'll need the full FreeSurfer 5.2 install in order to run the
recon-all script from 5.2. Running the 5.2 recon-all script with 5.0
binaries will not work.
Best Martin
On Mon, 2013-01-07 at 13:38 -0500, Jonathan Holt wrote:
> Hello all,
>
> Having a slight issue with recon-all 5.
Log file attached. Will try with debug ASAP.
s_98xx_v5.2.log
Description: Binary data
On Jan 7, 2013, at 1:38 PM, Jonathan Holt wrote:
> Hello all,
>
> Having a slight issue with recon-all 5.2. For reference, we're using
> Freesurfer 5.0.0 and trying to use recon-all 5.2 to alleviate so
you can also run it with --debug as the first option. That should be
more enlightening
On 01/07/2013 01:39 PM, Bruce Fischl wrote:
> Hi Jon
>
> we'll need more info than that. Can you send us the recon-all.log?
>
> cheers
> Bruce
>
> On Mon, 7
> Jan 2013, Jonathan Holt wrote:
>
>> Hello all,
>>
>>
Hi Jon
we'll need more info than that. Can you send us the recon-all.log?
cheers
Bruce
On Mon, 7
Jan 2013, Jonathan Holt wrote:
> Hello all,
>
> Having a slight issue with recon-all 5.2. For reference, we're using
> Freesurfer 5.0.0 and trying to use recon-all 5.2 to alleviate some issues
>
