This line hidden in the output I think is the reason: mri_make_uchar: Command not found.
That command was introduced in 5.1, and is used by the talairach stage. As Martin suggests, a separate v5.2 install is necessary. Nick On Mon, 2013-01-07 at 15:40 -0500, Martin Reuter wrote: > Hi Jonathan, > > you'll need the full FreeSurfer 5.2 install in order to run the > recon-all script from 5.2. Running the 5.2 recon-all script with 5.0 > binaries will not work. > > Best Martin > > On Mon, 2013-01-07 at 13:38 -0500, Jonathan Holt wrote: > > Hello all, > > > > Having a slight issue with recon-all 5.2. For reference, we're using > > Freesurfer 5.0.0 and trying to use recon-all 5.2 to alleviate some issues > > with disappearing white matter. I'm wondering if it is necessary to have > > Freesurfer 5.2 in order for recon-all 5.2 to work properly? > > > > When I say "crash" I mean it runs to completion after 30 seconds. Log files > > are not revelatory. > > > > best, > > jon > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
