Thanks a lot! It works!
--
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454
On 7/16/13 10:37 AM, "Bruce Fischl"
mailto:fis...@nmr.mgh.harvard.edu>> wrote:
I think in freeview the syntax would be:
freeview -f lh.inflated:label=lh.your_ROI.
I think in freeview the syntax would be:
freeview -f lh.inflated:label=lh.your_ROI.label
cheers
Bruce
On Tue, 16 Jul 2013, Yang, Daniel
wrote:
Hi Bruce,
Sorry for so many responses. I figured it out that I can visualize it using
tksurfer.
Besides this, can I visualize it in freeview, CAR
Hi Bruce,
Sorry for so many responses. I figured it out that I can visualize it using
tksurfer.
Besides this, can I visualize it in freeview, CARET, or some other tools? My
goal is to display the ROI on a fsaverage inflated surface.
If it can be done in freeview, could you give me some instruc
Hi Bruce,
Thanks so much! So I ran the following and obtained all the DK ROI labels.
mri_annotation2label --subject fsaverage --hemi rh --outdir
Then, I am wondering how I can use the label files. For example, can I overlay
it on a brain in fslview?
The label file has many lines. Could you su
Hi Daniel
you could use the DK annotation of the fsaverage brain, which I think we
supply. The atlas itself is a compilation of multiple statistics and not
easily visualizable (except for the prior probability I guess).
cheers
Bruce
On Tue, 16 Jul 2013, Yang, Daniel wrote:
Hi Bruce,
I am
Hi Bruce,
I am sorry, I mean, is there a DK atlas on a standard template brain (like MNI
152)? sorry, I don't know how DK atlas works. Is it a probabilistic atlas, or
dependent on the exact folding pattern of the unique individual? (I guess it's
the latter).
I'd like to generate a ROI brain ma
Hi Daniel
sorry, can you clarify? The DK atlas is estimated on every brain that you
run recon-all on and stored in the label directory. Is that what you want?
cheers
Bruce
On Mon, 15 Jul 2013,
Yang, Daniel wrote:
Dear FreeSurfer Expert,
I would like to draw the specific ROI of the DK atl
