Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-11 Thread fz2
5117 >>> Fax: +49 (0)621 3835123 >>> Email: frank.zoell...@medma.uni-heidelberg.de >>> Web: http://www.umm.uni-heidelberg.de/inst/cbtm/ckm/ >>> >>> >>> -Ursprüngliche Nachricht- >>> Von: freesurfer-boun...@nmr.mgh.harvard.e

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-11 Thread Z K
.@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von >> Zoellner, Frank >> Gesendet: Dienstag, 9. Februar 2016 15:49 >> An: Freesurfer support list >> Betreff: Re: [Freesurfer] Processing of young children using Freesurfer >> >&

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-11 Thread Bruce Fischl
harvard.edu] Im Auftrag von Zoellner, Frank Gesendet: Dienstag, 9. Februar 2016 15:49 An: Freesurfer support list Betreff: Re: [Freesurfer] Processing of young children using Freesurfer Hi Bruce, thanks for the reply. Here comes the output (see attached). I just downloaded the VM with freesurfer fr

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-10 Thread Zoellner, Frank
t/cbtm/ckm/ -Ursprüngliche Nachricht- Von: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Zoellner, Frank Gesendet: Dienstag, 9. Februar 2016 15:49 An: Freesurfer support list Betreff: Re: [Freesurfer] Processing of young children using

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Zoellner, Frank
arvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Bruce Fischl Gesendet: Dienstag, 9. Februar 2016 14:12 An: Freesurfer support list Betreff: Re: [Freesurfer] Processing of young children using Freesurfer hmmm, this doesn't seem to have to do with your data but maybe is a

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Bruce Fischl
hmmm, this doesn't seem to have to do with your data but maybe is an installation problem? It says it failed but doesn't give an error message, which is unusual. Can you try just typing in directly: cd /media/sf_cdh_ventrikel/test_002/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 5

Re: [Freesurfer] Processing of young children using Freesurfer

2016-02-09 Thread Zoellner, Frank
Hi again, just an update, I treid this all again with an older child (109 years) but same thing happens. Logfile attached. Yours Frank PD Dr. Frank Zoellner Group Leader "MRI and Medical Image Analysis" Computer Assisted Clinical Medicine Medical Faculty Mannheim Heidelberg Uni