Hi again, just an update, I treid this all again with an older child (109 years) but same thing happens. Logfile attached.
Yours Frank ---------------- PD Dr. Frank Zoellner Group Leader "MRI and Medical Image Analysis" Computer Assisted Clinical Medicine Medical Faculty Mannheim Heidelberg University Theodor-Kutzer-Ufer 1-3 D-68167 Mannheim Phone: +49 (0)621 3835117 Fax: +49 (0)621 3835123 Email: frank.zoell...@medma.uni-heidelberg.de<mailto:frank.zoell...@medma.uni-heidelberg.de> Web: http://www.umm.uni-heidelberg.de/inst/cbtm/ckm/ Von: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] Im Auftrag von Zoellner, Frank Gesendet: Dienstag, 9. Februar 2016 10:35 An: freesurfer@nmr.mgh.harvard.edu Betreff: [Freesurfer] Processing of young children using Freesurfer Hi, I am currently working on a project involving brain morphometry of 2 year old children. We are interested in segmenting the ventricle and I tried to run freesurfer using the standard recon-all -all for a first test. Unfortunately, freesurfer reports an error (see attached log file). I also read about that it is advised to run freesurfer with patient age >5 but maybe someone has an idea how to solve this. As far as I get from the step it crashes at the intensity correction step? Do I need to calculate some sort of template maybe ? Any comments welcome Yours Frank ---------------- PD Dr. Frank Zoellner Group Leader "MRI and Medical Image Analysis" Computer Assisted Clinical Medicine Medical Faculty Mannheim Heidelberg University Theodor-Kutzer-Ufer 1-3 D-68167 Mannheim Phone: +49 (0)621 3835117 Fax: +49 (0)621 3835123 Email: frank.zoell...@medma.uni-heidelberg.de<mailto:frank.zoell...@medma.uni-heidelberg.de> Web: http://www.umm.uni-heidelberg.de/inst/cbtm/ckm/
recon-all.log
Description: recon-all.log
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