Re: [Freesurfer] Infant Freesurfer: infant_recon_all error

2020-05-21 Thread Hoopes, Andrew
] Infant Freesurfer: infant_recon_all error External Email - Use Caution Hi, Thanks for the reply! The output for 'file' was tcsh. I switched to tcsh (just in that session) but got the same error when running infant_recon_all if: Expression Syntax Kind regards, -- Fl

Re: [Freesurfer] Infant Freesurfer: infant_recon_all error {Disarmed}

2020-05-20 Thread fsbuild
External Email - Use Caution I would check both csh and tcsh are installed with, $ which csh/bin/csh $ which tcsh/usr/bin/tcsh If not installed then do, e.g., for tcsh,$ sudo apt-get install  tcsh - subsequently the “which” command above should return the path to where it is on th

Re: [Freesurfer] Infant Freesurfer: infant_recon_all error

2020-05-20 Thread Fleur Warton
External Email - Use Caution Hi, Thanks for the reply! The output for 'file' was tcsh. I switched to tcsh (just in that session) but got the same error when running infant_recon_all if: Expression Syntax Kind regards, -- Fleur Warton Postdoctoral Research Fellow Division of B

Re: [Freesurfer] Infant Freesurfer: infant_recon_all error

2020-05-20 Thread fsbuild
External Email - Use Caution Hello Fleur, You should be able to do, $ file `which infant_recon_all` and the output should tell you if it it is a csh script, a Bourne shell script, a binary, etc. Unless you explicitly made csh or bash your default shell, then at