External Email - Use Caution Hi,
Thanks for the reply! The output for 'file' was tcsh. I switched to tcsh (just in that session) but got the same error when running infant_recon_all if: Expression Syntax Kind regards, -- Fleur Warton Postdoctoral Research Fellow Division of Biomedical Engineering Faculty of Health Sciences University of Cape Town On Wed, May 20, 2020 at 11:42 AM fsbuild <fsbu...@contbay.com> wrote: > Hello Fleur, > > You should be able to do, > > $ file `which infant_recon_all` > ... and the output should tell you if it it is a csh script, a Bourne > shell script, a binary, etc. > > Unless you explicitly made csh or bash your default shell, then at the > dollar sign prompt the default shell in Ubuntu is "dash" and not bash or > Bourne shell. If the file command reports it's a Bourne shell then it > might be a bash script. Or a bash script with a hash bang line of /bin/sh > will run using dash shell on Ubuntu and can exit with that error on bash > syntax/grammar. You can eliminate that possibility by first running bash, > and then the script, > > $ bash > $ infant_recon_all --s SUBJ --age AGE > (with I presume arguments substituted for SUBJ and AGE) > > - R. > > Fleur Warton <fleur.war...@gmail.com> > May 20, 2020 at 04:05 > > External Email - Use Caution > Hi, > > I recently installed the Infant FreeSurfer package. When I try to run > infant_recon_all (specific command: infant_recon_all --s SUBJ --age AGE) > > I get the error > > if: Expression Syntax > > I tried switching shells from bash to tcsh but got the same error. > > The FreeSurfer version is freesurfer-infant-20200205 > My platform is Ubuntu 18.04 > > Any suggestions how to fix this? > > Kind regards, > > Fleur > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > >
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