Hi Ed
just run them once - it will detect the manual interventions and preserve
them.
cheers
Bruce
On Mon, 29 Feb 2016, Ed Gronenschild wrote:
Hi Bruce,
I'm confused about this.
The manual-intervention workflow directives listed in recon-all (6 beta)
tell that the series of commands should b
Hi Bruce,
I'm confused about this.
The manual-intervention workflow directives listed in recon-all (6 beta)
tell that the series of commands should be:
-autorecon2
-autorecon2-cp
-autorecon3
-autorecon2 processes stages 6-23
and
-autorecon2-cp process stages 12-23
So it seems to be a waste of t
Hi Ed
if you run the skull stripping the autorecon2 and autorecon3 it should
detect and preserve your manual interventions
cheers
Bruce
On Thu, 25 Feb 2016, Gronenschild Ed (NP) wrote:
> Hi,
>
> I have made some manual skullstrip adjustments and added a
> number of control points in the white
Hi Ed,
I'm not sure if this'll help you, but I read your question right after I posted
mine, and thought to let you know the solution I used in cases where I had to
add control points:
"
Or Make Life Easier
recon-all -make all -s subjid
"
is copied from one of the Freesurfer Powerpoint slides
