Hi Ed
just run them once - it will detect the manual interventions and preserve
them.
cheers
Bruce
On Mon, 29 Feb 2016, Ed Gronenschild wrote:
Hi Bruce,
I'm confused about this.
The manual-intervention workflow directives listed in recon-all (6 beta)
tell that the series of commands should be:
-autorecon2
-autorecon2-cp
-autorecon3
-autorecon2 processes stages 6-23
and
-autorecon2-cp process stages 12-23
So it seems to be a waste of time to process stages 12-23 twice.
My question is: how to run stages 6-23 with control points?
Cheers,
Ed
On 26 Feb 2016, at 14:13, <freesurfer-requ...@nmr.mgh.harvard.edu>
<freesurfer-requ...@nmr.mgh.harvard.edu> wrote:
Hi Ed
if you run the skull stripping the autorecon2 and autorecon3 it
shouldÂ
detect and preserve your manual interventions
cheers
Bruce
On Thu, 25 Feb 2016, Gronenschild Ed (NP) wrote:
Hi,
I have made some manual skullstrip adjustments and added a
number of control points in the white matter.
How should I proceed with recon-all to incorporate both
adjustments?
Cheers,
Ed
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