Re: [Freesurfer] Hippocampal subfields: exporting results

2019-12-11 Thread Iglesias Gonzalez, Juan E.
fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on behalf of Steve Petersen Reply-To: Freesurfer support list Date: Wednesday, 11 December 2019 at 10:28 To: "freesurfer@nmr.mgh.harvard.edu" Subject: Re: [Freesurfer] Hippocampal subfields: exporti

Re: [Freesurfer] Hippocampal subfields: exporting results

2019-12-11 Thread Steve Petersen
External Email - Use Caution Dear Eugenio, I noticed what was the problem. I used freesurfer dev version with the following command: segmentHA_T2.sh I tried to export the hippocampal and amygdala results of several subjects with these commands and now everything works fine. qua

Re: [Freesurfer] Hippocampal subfields: exporting results

2019-12-11 Thread Iglesias Gonzalez, Juan E.
Dear Steve, Can you please send us: - The segmentation command you used for a sample subject - A list of the files under the mri directory for that subject. Cheers, /Eugenio Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com From: on be