External Email - Use Caution Dear Eugenio,
I noticed what was the problem. I used freesurfer dev version with the following command: segmentHA_T2.sh I tried to export the hippocampal and amygdala results of several subjects with these commands and now everything works fine. quantifyHAsubregions.sh hippoSf HIPO-AMY hippocampal_results.txt quantifyHAsubregions.sh amygNuc HIPO-AMY amygdala_results.txt Is there some difference between the *segmentHA_T2.sh* that I used and the command of the website? In that case I would like to use the most appropriated. recon-all -s <subject_name> *-hippocampal-subfields-T2* <file name of additional scan> <analysisID> Thanks in advance. Best regards,
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