Re: [Freesurfer] GLM error - cannot read fsgd file for reading

2017-08-10 Thread Douglas N Greve
y.mgh is the input file, usually the output of mris_preproc (after smoothing). See the group analysis tutorial. On 08/10/2017 11:48 AM, Nick Corriveau-Lecavalier wrote: > > Hi Freesurfer team, > > > First, sorry making a new post, I'm having trouble with my email and > I'm not able to reply dir

Re: [Freesurfer] GLM error - cannot read fsgd file for reading

2017-08-10 Thread Nick Corriveau-Lecavalier
Hi Freesurfer team, First, sorry making a new post, I'm having trouble with my email and I'm not able to reply directly on my yesterday's post. Here's my issue: I'm trying to make a group analysis with 3 groups using the mri_glmfit command. This it what the terminal says: Loading y from /A

Re: [Freesurfer] GLM error - cannot read fsgd file for reading

2017-08-09 Thread Douglas N Greve
make sure you pass the full path to the fsgd, otherwise it looks in the current folder. Also make sure it is readable by you On 08/09/2017 05:12 PM, Nick Corriveau-Lecavalier wrote: > > Hi Freesurfer team, > > > I'm trying to run a GLM analysis with three groups (Controls, MCI, AD) > with 0 cov