make sure you pass the full path to the fsgd, otherwise it looks in the current folder. Also make sure it is readable by you
On 08/09/2017 05:12 PM, Nick Corriveau-Lecavalier wrote: > > Hi Freesurfer team, > > > I'm trying to run a GLM analysis with three groups (Controls, MCI, AD) > with 0 covariables at the moment, but I would like to add two > eventually. I've been following the tutorial on this link: > https://surfer.nmr.mgh.harvard.edu/fswiki/Fsgdf3G0V, and when I write > the command it says ''cannot open g3v0.fsgd for reading''. > > > In my /subjects/fsgd file, there is my fsgd file, and my contrast > file. Am I missing an additionnal file or something? Is the format of > my files correct? > > > If it can help, here's what my fsgd file looks likes: > > > GroupDescriptorFile 1 > Title OSGM > Class Control > Class SCD > Class MCI > Variables > Input 3431566 CTL > Input 3514091 CTL > Input 4051959 CTL > Input 4344061 CTL > Input 4557550 CTL > Input 7060373 CTL > Input 7274924 CTL > Input 7308293 CTL > Input 7424803 CTL > Input 7459501 CTL > Input 7543023 CTL > Input 7661810 CTL > Input 8069157 CTL > Input 8330218 CTL > Input 8656527 CTL > Input 8875385 CTL > Input 9296157 CTL > Input 3025432 SCD > Input 3494204 SCD > Input 3702154 SCD > Input 3708747 SCD > Input 3865361 SCD > Input 4316663 SCD > Input 4509950 SCD > Input 4548020 SCD > Input 4893763 SCD > Input 5381177 SCD > Input 5477234 SCD > Input 5522727 SCD > Input 6121388 SCD > Input 6168985 SCD > Input 6258913 SCD > Input 6274286 SCD > Input 6334263 SCD > Input 6417837 SCD > Input 6427603 SCD > Input 7435733 SCD > Input 7485585 SCD > Input 7712552 SCD > Input 8827943 SCD > Input 8980899 SCD > > Regards, > > > Nick Corriveau-Lecavalier, B.Sc. (Hons) > Candidat au Ph.D. recherche/intervention, option neuropsychologie clinique > Coordonateur à la recherche, Association étudiante des cycles > supérieurs en psychologie de l'Université de Montréal (AÉCSPUM) > Université de Montréal > Centre de recherche de l'Institut universitaire de gériatrie de > Montréal, bureau M7819 > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
