Hi Doug,
Thanks, that makes it very clear.
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
*M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265
neu
OK, I've figured out what's going on. The cluster @ threshold of 1.3 in
superior temporal breaks up into 3 very small clusters when the
threshold is changed to 2.0, none of which are significant. There is a
cluster in middle temporal at 1.3 but it is not very significant
(p=.17), but it stays
Hi Doug,
The problem is with the "int_genderXgroup" contrast (between .05 & .01
cluster forming thresholds).
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Aus
There are a bunch of contrasts there. Which one had the discrepancy?
doug
On 12/15/2014 07:43 PM, Bronwyn Overs wrote:
> Hi Douglas,
>
> I uploaded my glmdir to you on the 3/12/14 (named
> site-gender-group-prothaplotype.area.lh.glmdir.zip). Can you see what
> the problem is?
>
> Kind regards,
Hi Douglas,
I uploaded my glmdir to you on the 3/12/14 (named
site-gender-group-prothaplotype.area.lh.glmdir.zip). Can you see what
the problem is?
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia
Margarete Ainsworth Building
Ba
Through the file drop at the end of this email. But you might want to
wait until next week as I will be out of the office until Dec 4.
doug
On 11/26/14 12:50 AM, Bronwyn Overs wrote:
Hi Douglas,
How exactly should I upload the glmdir?
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscie
Thanks Douglas, I will upload it then.
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
*M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399 1265
neura.ed
Hi Douglas,
How exactly should I upload the glmdir?
Kind regards,
Bronwyn Overs
Research Assistant
Neuroscience Research Australia
Neuroscience Research Australia
Margarete Ainsworth Building
Barker Street Randwick Sydney NSW 2031 Australia
*M* 0411 308 769 *T* +61 2 9399 1883 *F* +61 2 9399
Can you upload the gtlmdir and I'll take a look?
On 11/06/2014 08:19 PM, Bronwyn Overs wrote:
> I believe it is the cluster-forming threshold. I was running the
> following:
> mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache
> 1.3 abs --cwpvalthresh 0.05 --2spaces
> mri_g
I believe it is the cluster-forming threshold. I was running the following:
mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache
1.3 abs --cwpvalthresh 0.05 --2spaces
mri_glmfit-sim --glmdir site-gender-group-prothaplotype.glmdir --cache 2
abs --cwpvalthresh 0.05 --2spaces
Do you mean cluster-wise threshold or cluster-forming threshold?
On 11/06/2014 01:12 AM, Bronwyn Overs wrote:
> Dear Freesurfer Mailing list,
>
> While running a glm anlaysis with monte carlo correction (using
> cluster wise thresholds of .05 & .01), I encountered the following issue:
> When exa
11 matches
Mail list logo
