sure, glad to hear it worked
Bruce
On Fri, 4 Mar 2016, marmaduke woodman wrote:
> On 03/04/2016 10:50 PM, marmaduke woodman wrote:
>> On 03/04/2016 10:19 PM, Bruce Fischl wrote:
>>> I think you can map it to fsaverage5 then use mri_surf2surf with
>>> -sval-xyz to map the fsaverage5 surface back to
On 03/04/2016 10:50 PM, marmaduke woodman wrote:
> On 03/04/2016 10:19 PM, Bruce Fischl wrote:
>> I think you can map it to fsaverage5 then use mri_surf2surf with
>> -sval-xyz to map the fsaverage5 surface back to each subject
Sorry for the noise, fwiw, this seems to do the trick:
mri_surf2surf
On 03/04/2016 10:19 PM, Bruce Fischl wrote:
> I think you can map it to fsaverage5 then use mri_surf2surf with
> -sval-xyz to map the fsaverage5 surface back to each subject
This seems to generate a surface with the number of vertices in the
subject, (160k) not fsaverage5 (10k), though perhaps I'
I think you can map it to fsaverage5 then use mri_surf2surf with
-sval-xyz to map the fsaverage5 surface back to each subject
On Fri, 4 Mar
2016, marmaduke woodman wrote:
> On 03/04/2016 10:06 PM, Bruce Fischl wrote:
>> what are you trying to achieve?
>
> A per-subject ~10k vertex pial surface w
On 03/04/2016 10:06 PM, Bruce Fischl wrote:
> what are you trying to achieve?
A per-subject ~10k vertex pial surface with a corresponding annot. We
use it as a spatial domain for simulating neural activity; 150k vertices
is too many for this purpose.
> It might be easiest to use something like
what are you trying to achieve? It might be easiest to use something like
fsaverage5 as the downsampled surface. Then you would just map your
subjects to fsaverage5 using the existing sphere.reg files
cheers
Bruce
On Fri, 4 Mar 2016, marmaduke woodman wrote:
> On 03/04/2016 09:10 PM, marmaduke
On 03/04/2016 09:10 PM, marmaduke woodman wrote:
> However, I'd like to recover the cortical parcellation for the
> downsampled surface.
I tried to decimate the pial & white surfaces, generate a corresponding
thickness file and then
mris_sample_parc -ct /opt/freesurfer/FreeSurferColorLUT.txt tv
Hi
On 03/04/2016 07:06 PM, Bruce Fischl wrote:
> I think there are some tools around for downsampling the surfaces like
> mris_decimate. Have you tried any of them?
Yes, indeed mris_decimate works well for the downsampling.
However, I'd like to recover the cortical parcellation for the
downsam
Hi Marmaduke
I think there are some tools around for downsampling the surfaces like
mris_decimate. Have you tried any of them?
cheers
Bruce
On Wed, 2 Mar 2016, marmaduke woodman
wrote:
> Hi
>
> I would like to resample the cortical surface on the sphere at a lower
> resolution, and then deflat
