Re: [Freesurfer] Covariate for results of cortical parcellation

2010-04-08 Thread Liukarl
:33 -0500 > CC: schn...@gmail.com; freesurfer@nmr.mgh.harvard.edu; remembe...@hotmail.com > Subject: Re: [Freesurfer] Covariate for results of cortical parcellation > > > Hi Joost, > If you want to control for possible global differences in thickness, > then an appropriate

Re: [Freesurfer] Covariate for results of cortical parcellation

2010-04-08 Thread Michael Harms
Hi Joost, If you want to control for possible global differences in thickness, then an appropriate covariate of some sort is need. To me, a logical covariate for a thickness analysis is the mean cortical thickness, as this is more directly related to the measure of interest than something like th

Re: [Freesurfer] Covariate for results of cortical parcellation

2010-04-08 Thread Bruce Fischl
it all depends on your hypothesis. If you think there are regionally varying differences in the thickness and want to be conservative, then overall mean is a good way to test this, and is probably a more stable measure than ICV. It's all speculation I think as no one has really quantified the e

Re: [Freesurfer] Covariate for results of cortical parcellation

2010-04-08 Thread j janssen
Hi, you could try including average cortical thickness over the entire > hemisphere as a covariate. This was Mike Harms' suggestion, and I think a > good one. why is it a good one? for cortical thickness: i'm not so sure. my 2 cents (and i may be wrong!): - controlling for intracranial volume is

Re: [Freesurfer] Covariate for results of cortical parcellation

2010-04-07 Thread Bruce Fischl
Hi Karl, you could try including average cortical thickness over the entire hemisphere as a covariate. This was Mike Harms' suggestion, and I think a good one. cheers Bruce On Thu, 8 Apr 2010, Liukarl wrote: Hello, Freesurfer experts: I noticed for analyzing the results from autorecon2,