Re: [Freesurfer] Cerebellum white matter mask {Disarmed}

2014-07-28 Thread Alshikho, Mohamad J.
Sent: Monday, July 28, 2014 11:15 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] Cerebellum white matter mask {Disarmed} > > Hi Mohamad > > you can use mri_binarize --match or mri_extract_label on the aseg.mgz. > > cheers > Bruce > On > Mon, 28 Jul 2014

Re: [Freesurfer] Cerebellum white matter mask {Disarmed}

2014-07-28 Thread Douglas N Greve
Sent: Monday, July 28, 2014 11:15 AM > To: Freesurfer support list > Subject: Re: [Freesurfer] Cerebellum white matter mask {Disarmed} > > Hi Mohamad > > you can use mri_binarize --match or mri_extract_label on the aseg.mgz. > > cheers > Bruce > On > Mon, 28 Jul 2014

Re: [Freesurfer] Cerebellum white matter mask {Disarmed}

2014-07-28 Thread Alshikho, Mohamad J.
[freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, July 28, 2014 11:15 AM To: Freesurfer support list Subject: Re: [Freesurfer] Cerebellum white matter mask {Disarmed} Hi Mohamad you can use mri_binarize --match or mri_extract_label on

Re: [Freesurfer] Cerebellum white matter mask {Disarmed}

2014-07-28 Thread Bruce Fischl
Hi Mohamad you can use mri_binarize --match or mri_extract_label on the aseg.mgz. cheers Bruce On Mon, 28 Jul 2014, Alshikho, Mohamad J. wrote: Hi Fs expers, What is the best way in Freesurfer to create a mask for the cerebellum white matter from the output of T1 segmentation? ThanksĀ  moha