With mri_binarize you can give it multiple match options to merge
different segments
On 07/28/2014 11:50 AM, Alshikho, Mohamad J. wrote:
> Hi Bruce,
> Thank you very much for your quick answer,
> The output of those command lines are left and right cerebellum white matter.
> How can I create a mask for the whole cerebellum white matter?
>
> Thanks
> Mohamad
> ________________________________________
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl
> [fis...@nmr.mgh.harvard.edu]
> Sent: Monday, July 28, 2014 11:15 AM
> To: Freesurfer support list
> Subject: Re: [Freesurfer] Cerebellum white matter mask {Disarmed}
>
> Hi Mohamad
>
> you can use mri_binarize --match or mri_extract_label on the aseg.mgz.
>
> cheers
> Bruce
> On
> Mon, 28 Jul 2014, Alshikho, Mohamad J. wrote:
>
>> Hi Fs expers, What is the best way in Freesurfer to create a mask for the
>> cerebellum white matter from the output of T1 segmentation?
>>
>>
>> Thanks
>> mohamad
>>
>>
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