-mprage is probably your best bet, but it would be worth trying out both
ways and seeing the differences.
On Thu, 21 Mar 2013, Garikoitz Lerma-Usabiaga wrote:
Regarding the -mprage tag, we read in the recon-all help that:
-mprage : assume scan parameters are MGH MP-RAGE protocol
-washu_mprage
Regarding the -mprage tag, we read in the recon-all help that:
-mprage : assume scan parameters are MGH MP-RAGE protocol
-washu_mprage : assume scan parameters are Wash.U. MP-RAGE protocol.
both mprage flags affect mri_normalize and mri_segment,
and assumes a da
Josh,
The new -3T flag affects the nu correction stage, and specifies a 3T-based
target for the talairach alignment, and the existing -mprage flag affects
mri_normalize and mri_segment, so you can use both.
Nick
> The new Freesurfer has an optional flag to adjust NU intensity correction
> param
