Re: [Freesurfer] (MNI tools)

2005-06-13 Thread Bruce Fischl
Hi Arvind, no, you need to keep the hemispheres separate. Bruce On Mon, 13 Jun 2005, Arvind Gururajan wrote: Nick, Thanks. Yes, I used 'cd packages' and did the installation. After setting the environment and the subjit it works without errors. One more question, can I do a similar conver

Re: [Freesurfer] (MNI tools)

2005-06-13 Thread Arvind Gururajan
Nick, Thanks. Yes, I used 'cd packages' and did the installation. After setting the environment and the subjit it works without errors. One more question, can I do a similar conversion for one .orig file having both hemisphere data points and generate one inflated surface or would have to use lh

Re: [Freesurfer] (MNI tools)

2005-06-13 Thread Arvind Gururajan
Nick, Thanks for the clear description. I repeated the exact installation and got the same errors. I noticed that the 'current' directory was wrongly placed in this path. /usr/pubsw/mni/current. Repeated the same steps again, but now installed in the right directory. Getting the following errors:

Re: [Freesurfer] (MNI tools)

2005-06-10 Thread Nick Schmansky
Arvind I'm suspect that our instructions may be a bit confusing.  The files to download are not the netcdf and minc files from the MNI distribution site, but rather the file mni.Linux.tar.gz from our site (where it says 'Download MNI binaries for Linux and/or SunOS.', click on Linux).  Followi

Re: [Freesurfer] (MNI tools)

2005-06-10 Thread Arvind Gururajan
Hi Nick, I am running it on Linux platform. I followed the same instruction described here. http://surfer.nmr.mgh.harvard.edu/freesurfer/minc-download.html and downloaded these two files: NetCDF 3.5.0 and MINC 1.0 I am not sure, if I created the symbolic link correctly. ln -s 5.8.0 perl - ln: `

Re: [Freesurfer] (MNI tools)

2005-06-10 Thread Nick Schmansky
Arvind, Hi.  On what platform are you running?  Linux?  Did you follow the special installation instructions, involving making the symbolic links?  Lastly, are the tools in your path? If you are feeling brave, an alternative to installing the binaries is to compile the MNI package from sour

Re: [Freesurfer] (MNI tools)

2005-06-10 Thread Arvind Gururajan
Hi, I downloaded the entire MNI package. Although I see all these MNI files, I still get the same error, file not found. Any clues why this might be? Thanks, Arvind Gururajan On 9 Jun 2005, Bruce Fischl wrote: > just download and install the whole MNI package. Much easier than trying > to i