Re: [Freesurfer] t-value saved values

2007-09-25 Thread Glenn Lawyer
Yes. Doug Greve wrote: But while an F with J=1 gives the same p value as an unsighed t, the actual statistic will be F = t^2. Could this account for the discrepancy? Glenn Lawyer wrote: No, not at all sure. That is why I am asking. However, mri_glmfit says that the values should be t-values i

Re: [Freesurfer] t-value saved values

2007-09-24 Thread Doug Greve
But while an F with J=1 gives the same p value as an unsighed t, the actual statistic will be F = t^2. Could this account for the discrepancy? Glenn Lawyer wrote: No, not at all sure. That is why I am asking. However, mri_glmfit says that the values should be t-values if there is only one row

Re: [Freesurfer] t-value saved values

2007-09-21 Thread Glenn Lawyer
No, not at all sure. That is why I am asking. However, mri_glmfit says that the values should be t-values if there is only one row in the contrast matrix, which makes sense mathematically: "The F-ratio for the contrast is then given by: F = G'*inv(C*inv(X'W'*W*X))*C')*G/(J*rvar) The F is the

Re: [Freesurfer] t-value saved values

2007-09-20 Thread Doug Greve
The values in F.mgh are F dist under the null. But you should only have an F there if it is a multivariate contrast (ie, the contrast matrix has more than one row). doug Don Hagler wrote: Are you sure that it is saving t-values in F.mgh and not F-stats? From: Glenn Lawyer <[EMAIL PRO

RE: [Freesurfer] t-value saved values

2007-09-20 Thread Don Hagler
Are you sure that it is saving t-values in F.mgh and not F-stats? From: Glenn Lawyer <[EMAIL PROTECTED]> To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] t-value saved values Date: Thu, 20 Sep 2007 15:00:44 +0200 Hi, I asked about this last week, and had a nice discussion with Doug, b