RE: [Freesurfer] Autorecon re-processing

2005-09-20 Thread Bruce Fischl
follow the surface of the wm volume, and if there is anyway to fix it? Thanks, Alex -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Tue 9/20/2005 4:03 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Autorecon re-

RE: [Freesurfer] Autorecon re-processing

2005-09-20 Thread Fornito, Alexander
2:19 PM To: Fornito, Alexander Cc: Doug Greve; freesurfer@nmr.mgh.harvard.edu Subject:RE: [Freesurfer] Autorecon re-processing probably susceptibility problems. Try putting some control points in the wm, but there may not be enough g/w contrast to get good surfaces. On Tue, 20

RE: [Freesurfer] Autorecon re-processing

2005-09-19 Thread Bruce Fischl
surface of the wm volume, and if there is anyway to fix it? Thanks, Alex -Original Message- From: Doug Greve [mailto:[EMAIL PROTECTED] Sent: Tue 9/20/2005 4:03 AM To: Fornito, Alexander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Autorecon re-processing

RE: [Freesurfer] Autorecon re-processing

2005-09-19 Thread Fornito, Alexander
exander Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Autorecon re-processing does your version not tell you these things when you run -help? Fornito, Alexander wrote: >HI, >Just wanted to check a few things re: re-running autorecon. >I'm guessing that r

Re: [Freesurfer] Autorecon re-processing

2005-09-19 Thread Doug Greve
does your version not tell you these things when you run -help? Fornito, Alexander wrote: HI, Just wanted to check a few things re: re-running autorecon. I'm guessing that re-running autorecon with the -pial flag re-runs make_final_surfaces, which takes about 4-6 hours (correct?). What is