Re: [Freesurfer] zones of zero thickness

2013-07-05 Thread Bruce Fischl
Hi Sebastien check the aseg - it is probably regions that are not cortex (where the surface passes adjacent to a noncortical structure like the callosum or the basal ganglia Bruce On Fri, 5 Jul 2013, Sebastian Urchs wrote: > Hi, > > I found that in some of my subjects there are - after manu

[Freesurfer] zones of zero thickness

2013-07-05 Thread Sebastian Urchs
Hi, I found that in some of my subjects there are - after manual correction - focal regions with zero cortical thickness. On closer inspection, I can see that the white matter and pial boundaries are touching in these regions - hence probably the zero thickness. My question is: should I manually