Hi, I found that in some of my subjects there are - after manual correction - focal regions with zero cortical thickness. On closer inspection, I can see that the white matter and pial boundaries are touching in these regions - hence probably the zero thickness.
My question is: should I manually force these boundaries to separate and if so, what would be the best way to do so and by what margin? I attached a link to a shared image explaining the problem. Thanks a lot, Sebastian 019402_thickness.png - https://docs.google.com/file/d/0B2xRN4FkuGF9S2dHVm1lYjB4OUE/edit?usp=sharing
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