Re: [Freesurfer] wmfill problem

2005-12-22 Thread Bruce Fischl
oh yeah, you're right. Unless no tal exists, in which case it's "volume scanner". On Thu, 22 Dec 2005 [EMAIL PROTECTED] wrote: actually, I think it needs to be talairach coords. The next version will use indicies (and so will be independent of the tal transform). doug you need to use the "

Re: [Freesurfer] wmfill problem

2005-12-22 Thread greve
actually, I think it needs to be talairach coords. The next version will use indicies (and so will be independent of the tal transform). doug > you need to use the "volume scanner coords" in tkmedit, not the indices. > > On Thu, 22 Dec 2005, Sven Panis wrote: > >> Hi surfers, >> >> I experience

Re: [Freesurfer] wmfill problem

2005-12-22 Thread Bruce Fischl
you need to use the "volume scanner coords" in tkmedit, not the indices. On Thu, 22 Dec 2005, Sven Panis wrote: Hi surfers, I experience a problem during the first step of the create surface routine : fill white matter. Specifically, the ponscall.dat file in mri/tmp is empty and at the start

[Freesurfer] wmfill problem

2005-12-22 Thread Sven Panis
Hi surfers,   I experience a problem during the first step of the create surface routine : fill white matter. Specifically, the ponscall.dat file in mri/tmp is empty and at the start of step two (tessellate RH white matter) I'm asked to confirm that "the images in .../mri/filled/COR-0 cannot