Re: [Freesurfer] use and registration of FLAIR in recon-all and segmentHA

2024-12-04 Thread Simone Cauzzo
External Email - Use Caution Dear Douglas Thank you for the kind response I was wondering if Eugenio had the chance to look at this issue thank you Simone Cauzzo On Tue, Nov 12, 2024 at 12:58 PM Simone Cauzzo wrote: > Hi all > I am running Freesurfer 7.4 > I use recon-all with

Re: [Freesurfer] use and registration of FLAIR in recon-all and segmentHA (@Eugenio)

2024-11-12 Thread Douglas N. Greve
On 11/12/2024 6:58 AM, Simone Cauzzo wrote: External Email - Use Caution Hi all I am running Freesurfer 7.4 I use recon-all with the -FLAIRpial option. 1) I wonder whether the FLAIR to T1 registration is handled by recon-all or whether I need to supply a FLAIR image already registe

[Freesurfer] use and registration of FLAIR in recon-all and segmentHA

2024-11-12 Thread Simone Cauzzo
External Email - Use Caution Hi all I am running Freesurfer 7.4 I use recon-all with the -FLAIRpial option. 1) I wonder whether the FLAIR to T1 registration is handled by recon-all or whether I need to supply a FLAIR image already registered to T1. 2) in case recon-all handles th