Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-19 Thread Rujing Zha
nto 2 folders. So the recon-all running normally. Thanks Doug. All the best. 2013-12-19 Rujing Zha 发件人:Douglas N Greve 发送时间:2013-12-19 04:48 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"Rujing Zha" 抄送:"freesurfer" There ar

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-18 Thread Douglas N Greve
> /Rujing Zha/ > > *发件人:*Douglas N Greve > *发送时间:*2013-12-18 00:51 > *主题:*Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from > the command-line ERROR > *收件人:*"Rujing Zha" > *抄送:*"freesurfer" > Is that all it says? C

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-17 Thread Douglas N Greve
All the best. > >> > >> 2013-12-16 > >> > >> ________ > >> > > >> > >> Rujing Zha > >> > >> __

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Rujing Zha
:Douglas N Greve 发送时间:2013-12-17 02:56 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"freesurfer" 抄送: If you passed "-run 015" it should have generated a 015 folder and not a 013 folder. The only thing I can think may have

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Douglas N Greve
>> All the best. >> >> 2013-12-16 >> >> ____ >> >> Rujing Zha >> >> ________________ >> >> 发件人:Bruce Fischl &

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Bruce Fischl
发件人:Bruce Fischl 发送时间:2013-12-16 22:37 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"Rujing Zha" 抄送:"freesurfer"   no, I didn't get it  On Mon, 16 Dec 2013, Rujing Zha wrote:    > Dear Bruce,

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Rujing Zha
_______ > 发件人:Bruce Fischl > 发送时间:2013-12-16 22:24 > 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the > command-line ERROR > 收件人:"Rujing Zha" > 抄送:"freesurfer" > > sorry, I

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Bruce Fischl
e best.   2013-12-16 Rujing Zha 发件人:Bruce Fischl 发送时间:2013-12-16 22:24 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the co

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Rujing Zha
-16 22:24 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"Rujing Zha" 抄送:"freesurfer" sorry, I don't know that code very well. Doug is probably the right one to help you Bruce On Mon, 16 Dec 2013, Rujing Zha wrote: > De

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Bruce Fischl
the scan.info. Thanks Bruce. All the best.   2013-12-16 Rujing Zha ____ 发件人:Bruce Fischl 发送时间:2013-12-16 22:12 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"Rujing Zha&quo

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Rujing Zha
cmdir didnot recognized structure image correctly which was in the "15th" line of the scan.info. Thanks Bruce. All the best. 2013-12-16 Rujing Zha 发件人:Bruce Fischl 发送时间:2013-12-16 22:12 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"Ru

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Bruce Fischl
but why are you giving recon-all the path to run 013 instead of 015? I don't know the fsfast file structure, but your scan.info says that 013 is an EPI fun and 015 is the mprage On Sat, 14 Dec 2013, Rujing Zha wrote: Hi Bruce, It generated a 013 subfolder in after running this code "unpacks

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Rujing Zha
Thanks. All the best. 2013-12-16 Rujing Zha 发件人:Bruce Fischl 发送时间:2013-12-16 21:54 主题:Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人:"Rujing Zha" 抄送:"freesurfer" Hi Rujing why does the input volume have multiple frames? Is i

Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR

2013-12-16 Thread Bruce Fischl
Hi Rujing why does the input volume have multiple frames? Is it a multi-echo dataset? cheers Bruce On Sat, 14 Dec 2013, Rujing Zha wrote: Hi Bruce, It generated a 013 subfolder in after running this code "unpacksdcmdir -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3danat m