Hi Bruce, Maybe 163 email has some problems. I will try my gmail to send you and Louis my data. But I donot know whether your email can get attachment size 289M? Thanks. All the best.
2013-12-16 Rujing Zha 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu> 发送时间：2013-12-16 22:37 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人："Rujing Zha"<charujing...@163.com> 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu> no, I didn't get it On Mon, 16 Dec 2013, Rujing Zha wrote: > Dear Bruce, > Thanks Bruce. That's all right. > I want to know if I e-mail to you my subject's data successfully. The > subject's image had a incorrect segmentation in surfs after recon-all. > Thanks in advance. > All the best. > > 2013-12-16 > > ____________________________________________________________________________ > Rujing Zha > > ____________________________________________________________________________ > 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu> > 发送时间：2013-12-16 22:24 > 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the > command-line ERROR > 收件人："Rujing Zha"<charujing...@163.com> > 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu> > > sorry, I don't know that code very well. Doug is probably the right one to ?? ? > help you > Bruce > > > On Mon, 16 Dec 2013, Rujing Zha wrote: > > > Dear Bruce, > > I did setup the "-run 015" not "013" in unpacksdcmdir as I told in previo > us > > message. But it generated the "013" folder automatically after running > > unpacksdcdir, which made me so confused. > > As it created the "013" folder, I guess unpacksdcmdir didnot recognized > > structure image correctly which was in the "15th" line of the scan.info. ?? ?> Thanks Bruce. > > All the best. > > > > 2013-12-16 > > > > _________________________________________________________________________ > ___ > > Rujing Zha > > > > _________________________________________________________________________ > ___ > > 发件人：Bruce Fischl <fis...@nmr.mgh.harvard.edu> > > 发送时间：2013-12-16 22:12 > > 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the ?? ?> command-line ERROR > > 收件人："Rujing Zha"<charujing...@163.com> > > 抄送："freesurfer"<freesurfer@nmr.mgh.harvard.edu> > > > > but why are you giving recon-all the path to run 013 instead of 015? I ?? ?> don't know the fsfast file structure, but your scan.info says that 013 is > > ?? ?an EPI fun and 015 is the mprage > > > > On Sat, > > 14 Dec 2013, Rujing Zha wrote: > > > > > Hi Bruce, > > > It generated a 013 subfolder in after running this code "unpacksdcmdir ?? ? > > > -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3danat ?? ?mg > > z > > > 001.mgz". It is 15 that I can see the number of t1_mpr_ns_sag_iso_zhan > g > ?? ?in > > > the unpack.log. > > > Then I ran "recon-all -i ../work/liujunhao/3danat/013/001.mgz -s liujun > ha > > o", > > > and it finished without error. > > > "recon-all -s liujunhao -all" was run and ERROR would be displayed: > > > ERROR: input(s) cannot have multiple frames! > > > The recon-all.log unpack.log and scan.info were unloaded in the attachm > en > > t. > > > Thanks. > > > All the best. > > > > > > 2013-12-14 > > > > > > _______________________________________________________________________ > __ > > ___ > > > Rujing Zha > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it > i > > s > > addressed. If you believe this e-mail was sent to you in error and the e- > ma > > il > > contains patient information, please contact the Partners Compliance Help > Li > > ne at > > http://www.partners.org/complianceline . If the e-mail was sent to you in > e > > rror > > but does not contain patient information, please contact the sender and p > ro > > perly > > dispose of the e-mail. > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
