ry
> University of Colorado Anschutz Medical Campus
> 303-724-5490
>
> From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
> Sent: Wednesday, August 03, 2011 10:37 AM
> To: Moiyadi, Ammar
> Cc: freesurfer@nmr.mgh.harvard.edu
> Subject: RE
Moiyadi, Ammar
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] trac-all -path errors
Yes, that's the lang that I got, too. But the text file shows up with ^M's
where the ends of lines should be on darwin and on centos only the first 2
lines show up.
On Wed, 3 Aug 2011, Mo
__
> From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
> Sent: Wednesday, August 03, 2011 10:25 AM
> To: Moiyadi, Ammar
> Cc: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] trac-all -path errors
>
> Hi Ammar - It looks like it's the same text file formattin
From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
Sent: Wednesday, August 03, 2011 10:25 AM
To: Moiyadi, Ammar
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] trac-all -path errors
Hi Ammar - It looks like it's the same text file formatting issue
;
> From: Anastasia Yendiki [ayend...@nmr.mgh.harvard.edu]
> Sent: Monday, August 01, 2011 12:32 PM
> To: Moiyadi, Ammar
> Cc: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] trac-all -path errors
>
> Hi Ammar - Yes, -prior is t
Hi Ping,
This is an issue with the mac build, that we are currently working on
fixing. Anastasia, (cc'd) is working on a patch that you can download to
resolve this issue.
As far as the nb0 value is concerned you're correct, it assumes that the
first 7 volumes are b0, but it uses that to compute
t your Subject line so it is more specific
> than "Re: Contents of Freesurfer digest..."
>
>
> Today's Topics:
>
> 1. trac-all -path errors (Ping-Hong Yeh)
> 2. Re: trac-all -path errors (Priti Srinivasan)
>
>
> -----------------
m: Ping-Hong Yeh
Subject: [Freesurfer] trac-all -path errors
To: freesurfer@nmr.mgh.harvard.edu
Message-ID:
Content-Type: text/plain; charset=ISO-8859-1
Hi,
I got the error running "trac-all -path -c configure.txt"
ERROR: Could not open
${SUBJECTS_DIR}/$Subject/dlabel/diff/lh.cst_AS_av
Hi Ping,
The text files get created in the trac-all -prior stage. Maybe something
went wrong in that step. Is this the case for all the tracts or just for
this tract? If you can send us the trac-all.log file under the scripts
directory it'll be easier to troubleshoot as to what went wrong.
-Priti
Hi,
I got the error running "trac-all -path -c configure.txt"
ERROR: Could not open
${SUBJECTS_DIR}/$Subject/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt
I can only find only image files in the "dlabel/diff" directory, but
not text files.
Which step(s) create the lh.cst_AS_avg33_mni_flt_cpts
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