> Dr. Fischl,
>
> Thanks so much. Unfortunately, I had closed the window. But here is what
> happened:
>
> I set the environment: setenv FREESURFER_HOME /Applications/freesufer
>
> However, after typing the next command: source
> $FREESURFER_HOME/SetUpFreeSurfer.csh I got the following error:
>
> F
Hi Missy,
yes, that sounds like at least part of your problem. What trouble did you
have sourcing our env file? Can you send us the screen output?
Bruce
On Wed, 12
Sep 2012, Melissa Lancaster wrote:
Hi again-
I should have added that I am using Mountain Lion. I have downloaded Quartz
and
Hi Melissa
we need to know more about your environment. What kind of machine are
you running on? Are you running it directly on the terminal, or using
some type of remote access or virtual machine?
cheers,
Bruce
On Wed, 12 Sep 2012, Melissa
Lancaster wrote:
Hi,
It seemed I had successful
Hi again-
I should have added that I am using Mountain Lion. I have downloaded Quartz
and when I work from an X11 window I get:
tkmedit: command not found
I had difficulty with the source command when setting up the
FREESURFER_HOME directory but eventually got it to work...not sure if this
could
Hi,
It seemed I had successful installed Freesufer, but when I went to run the
tests I got errors with both tkmedit and tksurfer.
when typing I got the following error:
Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in
tkmedit.bin: could not open display:
when typing I got the f
Hi Joseph,
you are using a single subject? So how do you get the pvalue?
And 6 month is not a small amount of time.
I guess you need several subjects before and after the upgrade (if
possible within hours or days).
Martin
On Tue, 2011-05-10 at 11:31 -0400, Gullett,Joseph M wrote:
> Hello,
>
Hi Joe,
my guess is it has more to do with coil geometry than FS. The 8 channel
coils are not very homogeneous in the cortex. The 32 are in general much
better for surface recons. You could look at SNR or CNR maps and see if
they correlate with reliability
cheers
Bruce
On Tue, 10 May 2011, Gu
Hello,
Our University's MRI facility recently upgraded from an 8 channel to a 32
channel head coil. I have been doing some QC analyses to determine if this will
affect our results with T1 enough to warrant a regression for the number of RF
channels in the final study analysis. I ran FreeSurfer
Hi FreeSurfer's user,
I'm new using this software, I try to install on Ubuntu and to set up
following the recommendation of the webpage.
Then I tried to test but any commmand seems to be recognized, also when I
started a new terminal a warning is shown:
freesurfer-Linux-centos4_x86_64-st
Hi FreeSurfer's user,
I'm new using this software, I try to install on Ubuntu and to set up
following the recommendation of the webpage.
Then I tried to test but any commmand seems to be recognized, also when I
started a new terminal a warning is shown:
freesurfer-Linux-centos4_x86_64-sta
flirt is found in the directory $FSL_DIR, where FSL_DIR is the var set
when sourcing $FREESURFER_HOME/SetUpFreeSurfer.csh. What is the output
displayed after sourcing SetUpFreeSurfer.csh? And what distribution are
you using?
What is the mri_convert command line being used?
On Wed, 2006-03-15 at
I installed the freesurfer following exactly as the instructions on the
website. When I test it, "recon-all -s bert -all" doesn't work, it runs for
a few min. and shows "flirt: Command not found.
ERROR: running flirt". When I try to use my own data, convert dicom to mgt,
"mri_convert" command show
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