> Dr. Fischl, > > Thanks so much. Unfortunately, I had closed the window. But here is what > happened: > > I set the environment: setenv FREESURFER_HOME /Applications/freesufer > > However, after typing the next command: source > $FREESURFER_HOME/SetUpFreeSurfer.csh I got the following error: > > FREESURFER_HOME: Undefined variable. > > I found an old post on the listserv with a similar problem, and directly > copied the setenv command you had sent back to that user. I then got the > source command to work, and the output was in line with what the > installation website said I should get. Of note, at that time, I used a r > *egular terminal window*, I believe. > > A friend told me to 'echo $FREESURFER_HOME' to see what the path is > currently set at. When I do that, I get a blank space. > > Thanks so much for the help!!! > > -Missy > > > > On Thu, Sep 13, 2012 at 8:12 AM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu>wrote: > >> Hi Missy, >> >> yes, that sounds like at least part of your problem. What trouble did you >> have sourcing our env file? Can you send us the screen output? >> >> >> Bruce >> On Wed, 12 Sep 2012, Melissa Lancaster wrote: >> >> Hi again- >>> >>> I should have added that I am using Mountain Lion. I have downloaded >>> Quartz >>> and when I work from an X11 window I get: >>> tkmedit: command not found >>> >>> I had difficulty with the source command when setting up the >>> FREESURFER_HOME >>> directory but eventually got it to work...not sure if this could have >>> something to do with it. >>> >>> Thanks again!!! >>> -Missy >>> >>> On Wed, Sep 12, 2012 at 10:46 PM, Melissa Lancaster >>> <melissa.lancaster@my.rfums.**org <melissa.lancas...@my.rfums.org>> >>> wrote: >>> Hi, >>> >>> It seemed I had successful installed Freesufer, but when I went to run >>> the tests I got errors with both tkmedit and tksurfer. >>> >>> when typing <tkmedit bert orig.mgz> I got the following error: >>> >>> Couldn't create output file .xdebug_tkmeditGLUT: Fatal Error in >>> tkmedit.bin: could not open display: >>> >>> when typing <tksurfer bert rh pial> I got the following error: >>> GLUT: Fatal Error in tksurfer.bin: could not open display: >>> >>> >>> Any advice? >>> >>> Thanks, >>> Melissa >>> >>> >>> >>> >>> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >> If the e-mail was sent to you in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > > -- > Melissa A. Lancaster, M.S. > Clinical Psychology Doctoral Student > Rosalind Franklin University of Medicine and Science > >
-- Melissa A. Lancaster, M.S. Clinical Psychology Doctoral Student Rosalind Franklin University of Medicine and Science
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
