Dear Doug,
As I mentioned in a previous email, I'm currently working with T1 DICOM
files from the Clinical PACS System that I'd like to pull into the
freesurfer stream to get cortical thickness. I've unpacked the data,
converting the DICOM files to mgz format, and successfully ran the first
recon-
Hello,
I am fairly new to freesurfer, and recently encountered an error while running
recon-all (-autorecon1 -autorecon2) during Talairach Failure Detection:
talairach_afd -T 0.005 -xfm transforms/talairach.xfm
ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm
***Fp=0.0001, pv
Michelle,
Which version of freesurfer is installed? I think the libg2c dependency
was removed in the newest version.
Nick
On Mon, 2008-08-18 at 11:28 -0500, Michelle W. Voss wrote:
> Hello,
>
> This is my first time trying to use freesurfer on our data. We
> collect siemens dicom images, so I
Hello,
This is my first time trying to use freesurfer on our data. We collect
siemens dicom images, so I first manually reconstructed to .mgz format and
tried running the recon-all script. I've posted the log below.
Any ideas for fix?
thanks,
Michelle
mri_convert -it siemens_dicom -ot mgz
ONR
