Hello, I am fairly new to freesurfer, and recently encountered an error while running recon-all (-autorecon1 -autorecon2) during Talairach Failure Detection:
talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***Fp=0.0001, pval=0.0000 < threshold=0.0050) I have looked at the tutorial on "fixing bad output from the talairach registration," however, when I open up the image with tkregister2, there are no green lines. It seems to me that I should be using those lines to align various anatomical points. I tried using the 's' key to turn the lines "on," but nothing seems to happen (and yes, the fmov box is set to 1.0). I appreciate any help you can give me, thanks! Kristina ---- Kristina Rapuano Post-Bac IRTA Laboratory of Brain and Cognition, NIMH/NIH/DHHS Building 10, Room 4C214 10 Center Drive MSC 1366 Bethesda MD 20892-1366 Phone: (301) 402-4419 E-Mail : rapuan...@mail.nih.gov _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
