Re: [Freesurfer] surfaces and gifti

2011-12-09 Thread Bruce Fischl
Hi Nick, I did one pass at supporting a "both" prefix for both hemis combined. Can you make the output "both.pial.gii" and let's adopt that convention? thanks Bruce On Fri, 9 Dec 2011, Nick Schmansky wrote: > this should work: > > mris_convert --combinesurfs ./lh.pial ./rh.pial ./pial.gii > >

Re: [Freesurfer] surfaces and gifti

2011-12-09 Thread Nick Schmansky
this should work: mris_convert --combinesurfs ./lh.pial ./rh.pial ./pial.gii notice the output name has ./ in it, to override an old freesurfer-ism of appending a default hemi. also note that .gz is not necessary as gzip is the freesurfer default for gifti. however, freesurfers implementation d

[Freesurfer] surfaces and gifti

2011-12-08 Thread Satrajit Ghosh
hi all, this command: mris_convert --combinesurfs lh.pial rh.pial pial.gii.gz resulted in lh.pial.gii.gz (the help says it should generate pial.gii.gz). a related question. once i have this gifti file how do i get annotations+curvature info also into the file? (the gifti schema supports this rig