Hi Nick, I did one pass at supporting a "both" prefix for both hemis combined. Can you make the output "both.pial.gii" and let's adopt that convention?
thanks Bruce On Fri, 9 Dec 2011, Nick Schmansky wrote: > this should work: > > mris_convert --combinesurfs ./lh.pial ./rh.pial ./pial.gii > > notice the output name has ./ in it, to override an old freesurfer-ism > of appending a default hemi. also note that .gz is not necessary as > gzip is the freesurfer default for gifti. > > however, freesurfers implementation doesnt support storing all the info > in one file. the spec does allow this though, and there might be a way > to do it with gifti_tool (but my attempts with -infile and -write_gifti > failed). but since the gifti file format is xml, there may a > straightforward programmatic way to combine all the independently > created gifti data files into one. but lastly, i dont know if any of > the other gifti people have combined hemi info. > > n. > > On Fri, 2011-12-09 at 05:55 +0100, Satrajit Ghosh wrote: >> hi all, >> >> >> this command: mris_convert --combinesurfs lh.pial rh.pial pial.gii.gz >> >> >> resulted in lh.pial.gii.gz (the help says it should generate >> pial.gii.gz). >> >> >> a related question. once i have this gifti file how do i get >> annotations+curvature info also into the file? (the gifti schema >> supports this right?) >> >> >> essentially i am looking for a way to bundle the surface information >> into a single gifti container. >> >> cheers, >> >> satra >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
