Re: [Freesurfer] slice timing correction fmcstc files are lacking

2015-09-08 Thread Douglas N Greve
they are the files named like "fmcpr.odd.nii.gz" On 09/04/2015 08:17 AM, std...@virgilio.it wrote: > Hi using Philips scanner (interleaved) > Therefore, I'm running > > preproc-sess -sf sessid -fwhm 5 -surface fsaverage lhrh -mni305-1mm > -fsd rest -per-run -sliceorder odd > > However, as you c

Re: [Freesurfer] slice timing correction fmcstc files are lacking

2015-09-04 Thread stdp82
Hi using Philips scanner (interleaved)Therefore, I'm running preproc-sess -sf sessid -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run -sliceorder odd However, as you can see below stc has been not produced. file:///Applications/freesurfer/subjects/Sess101/rest/001/f.niifile:///Appli

Re: [Freesurfer] slice timing correction fmcstc files are lacking

2015-08-28 Thread Douglas Greve
what slice order was the data created with? Find out and then use that slice order in the command On 8/26/15 4:14 AM, std...@virgilio.it wrote: Hi list, I'm performing slice time correction on preproc-sess -s Sess201 -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run. I have acqui

[Freesurfer] slice timing correction fmcstc files are lacking

2015-08-26 Thread stdp82
Hi list, I'm performing slice time correction on preproc-sess -s Sess201 -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run.I have acquired data using a Philipps scanner (interleaved). Thefore, shuold I use "-sliceorder siemens"?The command line:preproc-sess -s Sess201 -fwhm 5 -surf

[Freesurfer] slice timing correction fmcstc files are lacking

2015-08-22 Thread stdp82
Hi list, I'm performing slice time correction on preproc-sess -s Sess201 -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run.I have acquired data using a Philipps scanner (interleaved). Thefore, shuold I use "-sliceorder siemens"?The command line:preproc-sess -s Sess201 -fwhm 5 -surfa