Hi list, I'm performing slice time correction on preproc-sess -s Sess201 -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run.I have acquired data using a Philipps scanner (interleaved). Thefore, shuold I use "-sliceorder siemens"?The command line:preproc-sess -s Sess201 -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run -sliceorder siemensproduces the files reported below. fmcstc files are lacking. Please, give me an help. Thanks, Stefano
file:///Applications/freesurfer/subjects/Sess201/rest/001/f.niifile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.mat.aff12.1Dfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.mcdatfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.nii.gz.mclogfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.siemens.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.siemens.nii.gz.logfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.siemens.sm5.fsaverage.lh.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.siemens.sm5.fsaverage.rh.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.siemens.sm5.mni305.1mm.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.sm5.fsaverage.lh.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.sm5.fsaverage.rh.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/fmcpr.sm5.mni305.1mm.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/global.meanval.datfile:///Applications/freesurfer/subjects/Sess201/rest/001/global.waveform.datfile:///Applications/freesurfer/subjects/Sess201/rest/001/init.register.dof6.datfile:///Applications/freesurfer/subjects/Sess201/rest/001/masks/file:///Applications/freesurfer/subjects/Sess201/rest/001/mcdat2extreg.logfile:///Applications/freesurfer/subjects/Sess201/rest/001/mcprextregfile:///Applications/freesurfer/subjects/Sess201/rest/001/register.dof6.datfile:///Applications/freesurfer/subjects/Sess201/rest/001/register.dof6.dat.logfile:///Applications/freesurfer/subjects/Sess201/rest/001/register.dof6.dat.mincostfile:///Applications/freesurfer/subjects/Sess201/rest/001/register.dof6.dat.paramfile:///Applications/freesurfer/subjects/Sess201/rest/001/register.dof6.dat.sumfile:///Applications/freesurfer/subjects/Sess201/rest/001/template.logfile:///Applications/freesurfer/subjects/Sess201/rest/001/template.nii.gzfile:///Applications/freesurfer/subjects/Sess201/rest/001/tmp.mc-afni2.6432/
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