Dear Doug,
I tried using --o instead of --ocp.
*Neither the sig.sum nor the sig.mgh file change.*
*So i dont see the postcentral cluster neither after running it with --o
in sig.mgh.*
But the cluster is present in the sig.sum file. i am not sure why it
could be like that.
Best Georgiana
Try using --o instead of --ocp
On 08/25/2016 05:50 AM, Oana Georgiana Rus wrote:
>
> Dear Doug,
>
> thanks a lot for responding. Here my command lines and attached the image.
>
> *So command line to perform the GLM analysis and get the sig.mgh file
> was:*
>
> mri_glmfit --y
> /data_august/Geo/
Dear Doug,
thanks a lot for responding. Here my command lines and attached the image.
*So command line to perform the GLM analysis and get the sig.mgh file was:*
mri_glmfit --y
/data_august/Geo/freesurfer_OCD/freesurf_steps/2_mris_preproc/education_out/rh.all_gender_age.volume.10.mgh
\
--f
Can you send the command line, the sum file, and a pic of the surface?
On 08/23/2016 04:39 AM, Oana Georgiana Rus wrote:
>
> Dear Freesurfer experts,
>
> I have run an analysis on GM Volume in Freesurfer.
>
> The interested contrast was patients vs. controls. (/command mri_glimfit/)
>
> I then ra
Dear Freesurfer experts,
I have run an analysis on GM Volume in Freesurfer.
The interested contrast was patients vs. controls. (/command mri_glimfit/)
I then ran /mri_surfcluster/ command to get a text file with the
significant clusters FDRcorrected and their peak coordinatesn- resulting
in a
