Re: [Freesurfer] selxavg3-sess ERROR: analysis XYZ does not exist

2012-05-25 Thread Michael Bannert
Hi Doug, Yes, that was the problem. I think Freesurfer expects that you start Matlab by typing "matlab" in the terminal (as opposed to "matlab2010a" which is what I usually do). So I created a new symbolic that takes care of that. Now I got the error message "ERROR: TR mismatch between analysis

Re: [Freesurfer] selxavg3-sess ERROR: analysis XYZ does not exist

2012-05-25 Thread Douglas Greve
yes, B is correct. The error says that it cannot find matlab. Is it in your path? doug On 5/25/12 9:16 AM, Michael Bannert wrote: Hi Doug, Thanks for your help! No, the current directory is the "Project" directory (refering to naming conventions in http://www.freesurfer.net/fswiki/FsFastTuto

Re: [Freesurfer] selxavg3-sess ERROR: analysis XYZ does not exist

2012-05-25 Thread Michael Bannert
Hi Doug, Thanks for your help! No, the current directory is the "Project" directory (refering to naming conventions in http://www.freesurfer.net/fswiki/FsFastTutorialV5.1/FsFastDirStruct). It is identical to $FUNCTIONALS_DIR. The rtopy.self.lh folder is in the "Sess0x" directory and contains o

Re: [Freesurfer] selxavg3-sess ERROR: analysis XYZ does not exist

2012-05-24 Thread Douglas N Greve
Hi Michael, is rtopy.self.lh in the current directory (the one that you are running selxavg from)? doug On 05/24/2012 07:57 AM, Michael Bannert wrote: > Hi all, > > I'm trying to analyze a retinotopic mapping dataset using FsFast but > some things don't seem to work the way they should. > > When

[Freesurfer] selxavg3-sess ERROR: analysis XYZ does not exist

2012-05-24 Thread Michael Bannert
Hi all, I'm trying to analyze a retinotopic mapping dataset using FsFast but some things don't seem to work the way they should. When running "selxavg-sess -s ex01s05 -a rtopy.self.lh", I get the following error: "ERROR: analysis rtopy.self.lh does not exist, see mkanalysis-sess" However, I c