Sorry, add --inv to the cmd line
Jared Price wrote:
> Doug, I tried mri_vol2vol --mov .../orig/001.mgz --targ ...orig/001.mgz
> --regheader -o ...This created a volume but the same issue
> remained. When I load a segmentation on top of the created volume,
> tkmedit won't let me alter the s
Doug, I tried mri_vol2vol --mov .../orig/001.mgz --targ ...orig/001.mgz
--regheader -o ...This created a volume but the same issue
remained. When I load a segmentation on top of the created volume,
tkmedit won't let me alter the segmentation. If I use "new
segmentation" as opposed to load
I would try using the norm.mgz or the nu.mgz if you think the norm is too
processed. The orig.mgz is the 001 sampled into 256^3 and 1mm iso
8bits/voxel
On Mon, 16 Nov 2009, Jared Price wrote:
> I guess I am not entirely sure what the contrast properties of orig.mgz
> are. After looking at the
There is a little bit of intensity normalization in the orig.mgz. You
can convert the 001.mgz to anatomical space with mri_vol2vol, something like
mri_vol2vol --mov orig/001.mgz --targ orig.mgz --regheader --o 001.anat.mgz
Jared Price wrote:
> I guess I am not entirely sure what the contrast pro
I guess I am not entirely sure what the contrast properties of orig.mgz
are. After looking at the recon-all DevTable I don't see anything that
explicitly mentions any intensity normalization occurring before this
point so I imagine it would work. I guess I will just ask you for your
suggesti
