There is a little bit of intensity normalization in the orig.mgz. You can convert the 001.mgz to anatomical space with mri_vol2vol, something like
mri_vol2vol --mov orig/001.mgz --targ orig.mgz --regheader --o 001.anat.mgz Jared Price wrote: > I guess I am not entirely sure what the contrast properties of orig.mgz > are. After looking at the recon-all DevTable I don't see anything that > explicitly mentions any intensity normalization occurring before this > point so I imagine it would work. I guess I will just ask you for your > suggestion. For this particular task I would like the grayscale image > to be as close to the original dicom images as possible with perhaps the > one exception of reslicing. > Jared > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
