thank you very much!
2012/9/26 Bruce Fischl
> or you could do it all in one command with:
>
>
> recon-all -i first_dicom_image_name.dcm -s subjID -all
>
> cheers
> Bruce
>
>
> On Wed, 26 Sep 2012, Darren Gitelman wrote:
>
> Pietro
>> You should first import your *.dcm files with the command
>>
or you could do it all in one command with:
recon-all -i first_dicom_image_name.dcm -s subjID -all
cheers
Bruce
On Wed, 26 Sep 2012,
Darren
Gitelman wrote:
Pietro
You should first import your *.dcm files with the command
recon-all -i first_dicom_image_name.dcm -s subjID
Then when you p
Hi Pietro
1. No, you would need 002.mgz etc.. if you had more than 1 scan that you
wanted to motion correct and average for that subject/session.
2. The easier way to run recon-all is to use the -i flag, where
should be one slice in the proper dicom series (e.g. an mprage).
Then you don't
Pietro
You should first import your *.dcm files with the command
recon-all -i first_dicom_image_name.dcm -s subjID
Then when you process your data you would type
recon-all -s subjID -autorecon1 -autorecon2
or whatever steps you are using.
Darren
On Wed, Sep 26, 2012 at 9:33 AM, pietro de ros
Dear FreeSurfers,
I am a beginner, trying to process some 3T MPRAGE scans on my own for a
project.
I have a couple of simple questions
1. When I run the recon-all –autorecon1 –autorecon2 command it asks me
for 001.mgz in mri/orig so I copy and paste the volume into the folder and
the c
