thank you very much! 2012/9/26 Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> or you could do it all in one command with: > > > recon-all -i first_dicom_image_name.dcm -s subjID -all > > cheers > Bruce > > > On Wed, 26 Sep 2012, Darren Gitelman wrote: > > Pietro >> You should first import your *.dcm files with the command >> >> recon-all -i first_dicom_image_name.dcm -s subjID >> >> Then when you process your data you would type >> >> recon-all -s subjID -autorecon1 -autorecon2 >> >> or whatever steps you are using. >> >> Darren >> >> On Wed, Sep 26, 2012 at 9:33 AM, pietro de rossi <deross...@gmail.com> >> wrote: >> Dear FreeSurfers, >> I am a beginner, trying to process some 3T MPRAGE scans on my own for >> a project. >> >> I have a couple of simple questions >> >> 1. When I run the recon-all ?autorecon1 ?autorecon2 command it asks me >> >> for 001.mgz in mri/orig so I copy and paste the volume into the >> folder and the command works. My question is: do I need to change >> 001.mgz to 002, 003 an so on for every scan I process? >> 2. I have to process 3T scans in a .dcm format. Can I just process >> >> the scan as it is? Do I have to save the .dcm files as another >> format, maybe a .mnc file? >> thank you very much in advance, >> >> Pietro >> >> -- >> Pietro De Rossi, MD >> ------------------------------**------- >> Sapienza Università di Roma, Facoltà di Medicina e Psicologia, >> Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), >> Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma >> >> NESMOS Department (Neurosciences, Mental Health and Sensory >> Functions), School of Medicine and Psychology, Sapienza University, >> Sant?Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy >> >> >> Neurobehavioral Clinical Research Section, Social and Behavioral >> Research Branch, National Human Genome Research Institute (NHGRI), >> National Institutes of Health (NIH), Bethesda, Maryland 20892, USA >> >> >> >> >> -- >> Darren Gitelman, MD >> Northwestern University >> 710 N. Lake Shore Dr. >> Abbott 11th Floor >> Chicago, IL 60611 >> Ph: (312) 908-8614 >> Fax: (312) 908-5073 >> >> >> >> >> > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. > If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- Pietro De Rossi, MD ------------------------------------- Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA
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