Re: [Freesurfer] problems about freesurfer7 with T2pial flag

2021-02-23 Thread Douglas N. Greve
That appears to be a bug in 7.1.1. As long as the surfaces are ok, you don't need to worry. On 2/22/2021 11:57 PM, Yijun Chen wrote: External Email - Use Caution Hi freesurfer experts: I encountered a problem about freesurfer 7 with the T2pial flag. when I use the freesurfer 6 — reco

[Freesurfer] problems about freesurfer7 with T2pial flag

2021-02-22 Thread Yijun Chen
External Email - Use Caution Hi freesurfer experts: I encountered a problem about freesurfer 7 with the T2pial flag. when I use the freesurfer 6 — recon-all -all -i -s -T2 -T2pial, the resulting T2.mgz is skull-stripped. however, when I switch to the freesurfer 7, the resulting T2