That appears to be a bug in 7.1.1. As long as the surfaces are ok, you
don't need to worry.
On 2/22/2021 11:57 PM, Yijun Chen wrote:
External Email - Use Caution
Hi freesurfer experts:
I encountered a problem about freesurfer 7 with the T2pial flag.
when I use the freesurfer 6 — recon-all -all -i -s -T2 -T2pial, the resulting
T2.mgz is skull-stripped.
however, when I switch to the freesurfer 7, the resulting T2.mgz is with skull.
Is there anything wrong?
Thanks,
Yijun.
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