Re: [Freesurfer] pial surface voxel shift

2011-10-21 Thread Sita Kakunoori
Hi Pernille, The shift doesn't really effect any edits or processing you might be doing on the datasets. But if you want to get rid of it, on the tkmedit tools window, you can select View -> Anatomical Resampling -> Main Volume/Aux volume -> Slice. Sita. On Fri, 21 Oct 2011, Bruce Fischl wr

Re: [Freesurfer] pial surface voxel shift

2011-10-18 Thread Bruce Fischl
eek, no, we definitely don't see this. Can you upload the subject? Bruce On Tue, 18 Oct 2011, Pernille Iversen wrote: > Hi > After running several subjects (using trio siemens dicomfiles) with recon-all > -all -nowmsa, we have observed an apparent shift of approximately one > voxel to the left

[Freesurfer] pial surface voxel shift

2011-10-18 Thread Pernille Iversen
Hi After running several subjects (using trio siemens dicomfiles) with recon-all -all -nowmsa, we have observed an apparent shift of approximately one voxel to the left of the pial surface as compared to the brainmask.mgz in the TkMedit coronal view. This was observed in all of our subjects. Do you